Contributed Talk 3: Metabolic Network Approaches for delineating functional division within Bacterial Communities
Duration: 17 mins 25 secs
Share this media item:
Embed this media item:
Embed this media item:
About this item
| Description: |
Freilich, S (Agricultural Research Organization)
Thursday 30 October 2014, 17:05-17:20 |
|---|
| Created: | 2014-11-05 11:04 |
|---|---|
| Collection: | Understanding Microbial Communities; Function, Structure and Dynamics |
| Publisher: | Isaac Newton Institute |
| Copyright: | Freilich, S |
| Language: | eng (English) |
| Distribution: |
World
(downloadable)
|
| Explicit content: | No |
| Aspect Ratio: | 16:9 |
| Screencast: | No |
| Bumper: | UCS Default |
| Trailer: | UCS Default |
| Abstract: | Co-authors: Shani Ofaim (ARO), Tamar Lahav (ARO)
Rapid advances in metagenomics and genome sequencing have led to the accumulation of vast amounts of empirical ecological data. With the increase in ecological data production, the need for robust automated functional community analysis approaches rises. The genomic-based construction of a communal metabolic network allows the investigation of the functional division between its participants, showing the metabolic hierarchy in the sampled environment. More specifically, such hierarchy allows the identification of key reaction allowing the environment-specific metagenome to make use of the available resources allowing, for example N- and S assembly as well as the utilization of complex carbohydrates. Taxonomic classification of such reactions further allows delineating the corresponding functional significance of species-groups and their specific contribution to the meta-level metabolism. Here, I will discuss the use of such metabolic network approaches for carrying a functio nal division analysis of communities in the rhizosphere and bulk soil environments based on RNA Seq data. |
|---|---|
Available Formats
| Format | Quality | Bitrate | Size | |||
|---|---|---|---|---|---|---|
| MPEG-4 Video | 640x360 | 1.93 Mbits/sec | 252.97 MB | View | Download | |
| WebM | 640x360 | 1.15 Mbits/sec | 150.90 MB | View | Download | |
| iPod Video | 480x270 | 522.26 kbits/sec | 66.62 MB | View | Download | |
| MP3 | 44100 Hz | 249.78 kbits/sec | 31.89 MB | Listen | Download | |
| Auto * | (Allows browser to choose a format it supports) | |||||